Senior Research Engineer On Research Infrastructures For Precision Medicine Projects
hace 2 semanas
- European organization founded in 2014 which aims to integrate and harmonize European bioinformatics infrastructures.
ESFRI, Research Data Alliance, EUDat and EGI; promotes specific training activities and workshops on ELIXIR resources, partners with industry, and play a key role in shaping the bioinformatics landscape.
Spain has been a member of ELIXIR since 2015, with the Spanish National Bioinformatics Institute (INB) as the Spanish national node.
Within ELIXIR, the INB is responsible for the bioinformatics infrastructure offered by Spain and, therefore, should guarantee its alignment with the strategic areas put forward by ELIXIR.
Since 2018, the INB has two overarching objectives:
deepen the alignment of its activities with ELIXIR, and increase the translational impact of INB actions towards the Spanish National Health System (SNS).
For the latter objective, the INB has created and supports TransBioNet (Translational Bioinformatics Network), which aims to structure, bring together and work with bioinformatics groups in healthcare settings with a particular focus on the Health Research Institutes (IIS) recognized by the ISCIII.
Since 2021, the INB has continued its activities in the context of IMPaCT-Data, the Data Science programme of IMPaCT.IMPaCT is the Spanish National Infrastructure for Personalized Medicine associated with Science and Technology by the National Health Research Institute Carlos III (ISCIII)In 2022, the European Commission launched several flagship projects focused on using and re-using biomedical data to enable and accelerate research activities.
In this context, the BSC participates in the European Genomic Infrastructure (GDI) and the EUropean federation for CAncer IMages (EUCAIM).
The GDI project will enable access to genomic and related phenotypic and clinical data across Europe. It is doing that by establishing a federated, sustainable and secure infrastructure to access the available data.GDI builds on the outputs of the Beyond 1 Million Genomes (B1MG) project and is realising the ambition of the 1+Million Genomes (1+MG) initiative and represents the implementation phase of the overall ambition of enabling the use of genomics data for precision medicine.
Regarding EUCAIM, it is the cornerstone of the European Commission-initiated European Cancer Imaging Initiative, a flagship of Europe's Beating Cancer Plan (EBCP), which aims to foster innovation and deployment of digital technologies in cancer treatment and care to achieve more precise and faster clinical decision-making, diagnostics, treatment and predictive medicine for cancer patients.
The ultimate goal is to deploy a pan- European digital federated infrastructure of FAIR cancer related, de identified, real world images.
EUCAIM will address the fragmentation of existing cancer image repositories by building on repositories from the AI4HI initiative, European research infrastructures and national/regional repositories including clinical images, pathology, molecular and laboratory data.
Key DutiesShare the responsibilities on the developments of flagship projects like the European Genomic Data Infrastructure (GDI), the EUropean federation for CAncer IMages (EUCAIM) and the reference implementation for IMPaCT-Data.
Develop, document and maintain software for the integration and biological data following the guidelines of ELIXIR.Responsibly participate in relevant technical activities within ELIXIR platforms, communities and focus groups.
Contribute to supervising junior members at the INB/ELIXIR-ES units. RequirementsEducationBSc or MSc. in bioinformatics, computational biology or computer sciences with significant bioinformatics experience.Essential Knowledge and Professional ExperienceAt least 3 years of professional experience with a similar role.
Experience with software life cycle involving repositories, continuous integration and public releases. using software ecosystem repositories, like maven repositories, PyPI, npmjs, composer or CPAN.Experience in cloud deployments.
Experience in data management APIs and most common bioinformatics data sources and formats.
Experience in query building and optimization in at least one SQL and one NoSQL ecosystem:
MySQL/MariaDB, PostgreSQL, SQLite or similar; MongoDB, ElasticSearch, Cassandra or similar.
Experience with advanced software packaging procedures.
At least 3 years of continuing professional experience in at least one programming language ecosystem such as C++, Perl, Python, PHP and/or Java.
Vast experience working with Unix/Linux systems.Experience in data management.
Experience in developing project technical specifications.
Additional Knowledge and Professional ExperienceExperience in the use, generation and development of reproducible recipes for software containers, base on some established technology like docker, singularity/apptainer or podman.
Experience designing and using software infrastructure deployment techniques which involve docker compose, Kubernetes, Ansible or similar.Experience in scientific workflow engines, like Galaxy, Nextflow or similar.
Experience in database design and database management are a plus.
Fluency in English written and spoken.
At least basic knowledge of Spanish.
CompetencesAbility to understand scientific literature and software documentation.
Ability to communicate scientific results.
Ability to work independently.
Ability to represent the team in international project meetings.
Used to work under pressure under strict deadlines. ConditionsThe position will be located at BSC within the Life Sciences DepartmentWe offer a full-time contract (37.5h/week), a good working environment, a highly stimulating environment with state-of-the-art infrastructure, flexible working hours, extensive training plan, restaurant tickets, private health insurance, support to the relocation proceduresDuration: Open-ended contract due to technical and scientific activities linked to the project and budget durationHolidays: 23 paid vacation days plus 24th and 31st of December per our collective agreementSalary: we offer a competitive salary commensurate with the qualifications and experience of the candidate and according to the cost of living in BarcelonaStarting date: asap Applications procedure and processAll applications must be made through BSC website application form and contain:A full CV in English including contact detailsA Cover Letter with a statement of interest in English, including two contacts for further references
- Applications without this document will not be consideredIn accordance with the OTM-R principles, a gender balanced recruitment panel is formed for every vacancy at the beginning of the process.
The panel will make a final decision and all candidates who had contacts with them will receive a feedback with details on the acceptance or rejection of their profile.
At BSC we are seeking continuous improvement in our recruitment processes, for any suggestions or feedback/complaints about our Recruitment Processes, please contact
For more information followthis link DeadlineThe vacancy will remain open until a suitable candidate has been hired.
- CNS is committed to the principles of the Code of Conduct for the Recruitment of Researchers of the European Commission and the Open, Transparent and Merit based Recruitment principles (OTM-R).
BSC-CNS is an equal opportunity employer committed to diversity and inclusion.
We are pleased to consider all qualified applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, disability or any other basis protected by applicable state or local law.
For more information followthis linkThis position is reserved for candidates who meet the requirements and have the legal status of disabled persons with a degree of disability equal to or greater than 33%.
In case there are no applicants with disabilities that meet the requirements, the rest of the candidates without declared disability will be evaluated#J-18808-Ljbffr
-
Barcelona, Barcelona, España Barcelona Supercomputing Center A tiempo completoSenior Research Engineer on Research Infrastructures for Precision Medicine projects (RE3) at the INB coordination team Senior Research Engineer on Research Infrastructures for Precision Medicine projects (RE3) at the INB coordination team Job title: Senior Research Engineer on Research Infrastructures for Precision Medicine projects (RE3)About BSCThe...
-
Plaça De Research Engineer On Research
hace 2 semanas
Barcelona, Barcelona, España Barcelona Supercomputing Center-Centro Nacional De Supercomputación (Bsc-Cns) A tiempo completoBarcelona Supercomputing Center-Centro Nacional de Supercomputación (BSC-CNS). 1 plaça de Research Engineer on Research Infrastructures for Precision Medicine projects (RE1). Concurs o valoració de mèrits. Laboral temporal Termini obert. A1 - Grau universitari (correspondència amb llicenciatures). BSc o MSc en bioinformàtica, biologia computacional o...
-
Research Senior Engineer
hace 2 semanas
Barcelona, Barcelona, España Barcelona Supercomputing Center (BSC) A tiempo completoJob Reference: 205_24_CS_SS_RE2Position: Research Senior Engineer Machine Learning Operations (RE2)Closing Date:Monday, 15 April, 2024Reference: 205_24_CS_SS_RE2Job title: Research Senior Engineer Machine Learning Operations (RE2)About BSC The Barcelona Supercomputing Center Centro Nacional de Supercomputación (BSC-CNS) is the leading supercomputing center...
-
plaça de Research engineer
hace 2 semanas
Barcelona, Barcelona, España Barcelona Supercomputing Center-Centro Nacional de Supercomputación (BSC-CNS) A tiempo completo260 ofertas de Research engineer en Barcelona Barcelona Supercomputing Center-Centro Nacional de Supercomputación (BSC-CNS) Barcelona Supercomputing Center-Centro Nacional de Supercomputación (BSC-CNS) Barcelona Supercomputing Center-Centro Nacional de Supercomputación (BSC-CNS) Barcelona Supercomputing Center-Centro Nacional de Supercomputación...
-
Senior Research Engineer
hace 2 semanas
Barcelona, Barcelona, España Barcelona Supercomputing Center (BSC) A tiempo completoJob Reference: 111_23_CS_DCC_RE2Position: Senior Research Engineer Machine Learning Operations (RE2)Closing Date:Friday, 31 March, 2023Reference: 111_23_CS_DCC_RE2Job title: Senior Research Engineer Machine Learning Operations (RE2)About BSC The Barcelona Supercomputing Center Centro Nacional de Supercomputación (BSC-CNS) is the leading supercomputing...
-
Senior Research Engineer
hace 2 semanas
Barcelona, Barcelona, España Barcelona Supercomputing Center (BSC) A tiempo completoJob Reference: 105_24_CASE_LSCFD_RE2/RE3Position: Senior Research Engineer codesign activities around RISC-V (CASE & CS) (RE23)Closing Date:Saturday, 16 March, 2024Reference: 105_24_CASE_LSCFD_RE2/RE3Job title: Senior Research Engineer co-design activities around RISC-V (CASE & CS) (RE2-3)About BSC The Barcelona Supercomputing Center Centro Nacional de...
-
Precision Medicine Lead
hace 2 semanas
Barcelona, Barcelona, España AstraZeneca A tiempo completoPrecision Medicine Lead - Chronic DiseasesMacclesfield (UK), Gothenburg (Sweden), Warsaw (Poland) and Barcelona (Spain).Could you provide the scientific leadership in Precision Medicine that enables a world-leading biopharmaceutical company to change the way healthcare is delivered to individual patients?At AstraZeneca, we're looking for Precision Medicine...
-
Senior Research Engineer
hace 2 semanas
Barcelona, Barcelona, España Barcelona Supercomputing Center (BSC) A tiempo completoJob Reference: 488_22_CASE_PT_RE2Position: Senior Research Engineer Numerical simulation of reacting flows for sustainable energy conversion (RE2)Closing Date:Tuesday, 28 February, 2023Reference: 488_22_CASE_PT_RE2Job title: Senior Research Engineer Numerical simulation of reacting flows for sustainable energy conversion (RE2)About BSC The Barcelona...
-
Barcelona, Barcelona, España Barcelona Supercomputing Center-Centro Nacional De Supercomputación (Bsc-Cns) A tiempo completoBarcelona Supercomputing Center-Centro Nacional de Supercomputación (BSC-CNS) Barcelona Supercomputing Center-Centro Nacional de Supercomputación (BSC-CNS). 1 plaça de Junior research engineer for climate services. Urban climate (RE 20 días Barcelona Supercomputing Center-Centro Nacional de Supercomputación (BSC-CNS) Barcelona Supercomputing...
-
Senior Research Engineer
hace 2 semanas
Barcelona, Barcelona, España Somm Excellence Alliance A tiempo completoContext And MissionThe backbone of CASE is centred on the fact that today, the capabilities of leading-edge emerging HPC architectures are not fully exploited by industrial simulation tools. Given the expertise of the Department, we will focus on fluid mechanical problems (CFD), but this upstream research can be applied to a variety of industries, some of...
-
Senior Statistical Research Technician
hace 2 semanas
Barcelona, Barcelona, España Teaching and Research Staff A tiempo completoWho we areSince 1997 we have been teaching students on the principle of academic rigor and a fulfilling, life-enriching university life experience. UIC Barcelona currently has around 8,000 students and offers 16 degrees, 30 international double degrees, and a wide range of master's and postgraduate programs, as well as continuous training courses in numerous...
-
Research Engineer
hace 2 semanas
Barcelona, Barcelona, España Barcelona Supercomputing Center (BSC) A tiempo completoJob Reference: 308_23_CS_PPC_RE2Position: Research Engineer Edge and cloud computing technologies (RE2)Closing Date:Friday, 16 February, 2024Reference: 308_23_CS_PPC_RE2Job title: Research Engineer Edge and cloud computing technologies (RE2)About BSC The Barcelona Supercomputing Center Centro Nacional de Supercomputación (BSC-CNS) is the leading...
-
Research Engineer
hace 2 semanas
Barcelona, Barcelona, España Barcelona Supercomputing Center (BSC) A tiempo completoJob Reference: 91_24_CS_AIR_RE1Position: Research Engineer Foundation models & LLMs (RE1)Closing Date:Thursday, 29 February, 2024Reference: 91_24_CS_AIR_RE1Job title: Research Engineer Foundation models & LLMs (RE1)About BSC The Barcelona Supercomputing Center Centro Nacional de Supercomputación (BSC-CNS) is the leading supercomputing center in Spain. It...
-
Postdoctoral Research Working Contract
hace 2 semanas
Barcelona, Barcelona, España Teaching and Research Staff A tiempo completoAbout UIC BarcelonaUIC Barcelona is home to over 8,000 students and offers 16 bachelor's degree programmes, 26 international double degrees and a wide range of master's and postgraduate degrees, in addition to continuing education courses in different fields of knowledge. Since 1997, we have been teaching people based on academic rigour, a fulfilling...
-
Senior Research Engineer
hace 2 semanas
Barcelona, Barcelona, España ICN2 A tiempo completoThe mission of the Catalan Institute of Nanoscience and Nanotechnology (ICN2) is to achieve the highest level of scientific and technological excellence in Nanoscience and Nanotechnology. Its research lines focus on the newly-discovered physical and chemical properties that arise from the behaviour of matter at the nanoscale. ICN2 has been awarded with the...
-
Research Engineer
hace 2 semanas
Barcelona, Barcelona, España Barcelona Supercomputing Center (BSC) A tiempo completoJob Reference: 167_23_CS_AIR_RE1Position: Research Engineer (RE1)Closing Date: Sunday, 16 April, 2023Reference: 167_23_CS_AIR_RE1Job title: Research Engineer (RE1)About BSC The Barcelona Supercomputing Center Centro Nacional de Supercomputación (BSC-CNS) is the leading supercomputing center in Spain. It houses MareNostrum, one of the most powerful...
-
Research Engineer In
hace 2 semanas
Barcelona, Barcelona, España Telefónica, S.A. A tiempo completoResearch Engineer in (Distributed) Machine Learning for Systems & Networks Telefonica Research is a leading industrial research lab based in Barcelona (Spain). The lab conducts research on various technological areas of interest for the Telefónica Group, collaborating with universities and research institutions for knowledge dissemination. The Research...
-
Research Engineer
hace 2 semanas
Barcelona, Barcelona, España Barcelona Supercomputing Center (BSC) A tiempo completoJob Reference: 344_24_LS_MLFBR_RE1Position: Research Engineer Machine Learning and Artificial Intelligence for Biomedical Research (RE1)Closing Date:Monday, 01 July, 2024Reference: 344_24_LS_MLFBR_RE1Job title: Research Engineer Machine Learning and Artificial Intelligence for Biomedical Research (RE1)About BSC The Barcelona Supercomputing Center Centro...
-
Junior Research Engineer
hace 2 semanas
Barcelona, Barcelona, España Sebibc A tiempo completoELIXIR (European Life Science Infrastructure for Biological Information) is a pan-European organization founded in 2014 which aims to integrate and harmonize European bioinformatics infrastructures. ELIXIR coordinates the participation of more than 22 countries; engages with other strategic European initiatives and projects, e.g. ESFRI, Research Data...
-
Barcelona, Barcelona, España Vall d'Hebron Research Institute (VHIR) A tiempo completoThe University Hospital Vall d'Hebron is highly specialized in rare diseases on a Regional, national and international levelwith its incorporation as full member of 20 of the 24 European Reference Networks (ERN).The scientific direction of the ERN-EuroBloodNet,, the ERN dedicated to Rare HematologicalDiseases (RHD), is led by Dr Mañú Pereira, head of the...
