Phd Position: Fluidic Light Sheet Microscopy

hace 2 semanas

Barcelona, Barcelona, España Somm Excellence Alliance A tiempo completo

This project will bring screening with Imaging Flow Cytometry (IFC) to the next level, opening the way to clinical diagnostics, making it accessible to a large range of users, democratizing its adoption.

The project will connect closer the fields of microfluidics, microfabrication, microscopy and machine learning, complementing the training of the researcher with expertise with in-vitro diagnostics.

The researcher will fully exploit the capabilities of the existing IFC instruments and initiate the development of the next generation automatic and data-driven diagnosis.

(i) develop optical, cell manipulation and fluidics lab on chips (mm-scaled);
(ii) extend the capabilities of imaging flow cytometry with novel contrast mechanisms;
(iii) high resolution imaging at, and beyond, the diffraction limit (100 volumes/s).

  • Preparing biological samples for optimal imaging.
  • Developing and implementing new and advanced novel imaging instruments, based on Light Sheet Fluorescence Microscopy (LSFM).
  • Analyzing complex sets of bigdata images to extract relevant information using Deep learning strategies.
  • Using processed images to design computational and mathematical

Secondment and international collaborations:

The project involves an exciting network of collaborators and will include several secondments abroad in top European institutes and companies.

Requirements and conditions

Good knowledge in:

  • Optics
  • Implementation of optical setups
  • Deep learning techniques (Numpy, Pandas, Seaborn, etc.
  • Control software and programming skills (LabView, Arduino, etc.)
  • Image processing (skimage, Python, scipy, etc)
Application procedure

Deadline:
September 26, 2023

Job category:
PhD Student

Area:
Maths, Experimental Sciences and Engineering

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