Computational Biology Systems Researcher

hace 3 semanas

Barcelona, España Barcelona Supercomputing Center (BSC) A tiempo completo

**Job Reference**:

- 183_24_LS_CB_R2-3**Position**:

- Computational Biology Systems Researcher (R2-3) - codesign activities (LS & CS)**Closing Date**:

- Tuesday, 30 April, 2024**Reference**: 183_24_LS_CB_R2-3**Job title**: Computational Biology Systems Researcher (R2-3) - codesign activities (LS & CS)**About BSC**
- The Barcelona Supercomputing Center - Centro Nacional de Supercomputación (BSC-CNS) is the leading supercomputing center in Spain. It houses MareNostrum, one of the most powerful supercomputers in Europe, was a founding and hosting member of the former European HPC infrastructure PRACE (Partnership for Advanced Computing in Europe), and is now hosting entity for EuroHPC JU, the Joint Undertaking that leads large-scale investments and HPC provision in Europe. The mission of BSC is to research, develop and manage information technologies in order to facilitate scientific progress. BSC combines HPC service provision and R&D into both computer and computational science (life, earth and engineering sciences) under one roof, and currently has over 900 staff from 55 countries.
- Look at the BSC experience:

- BSC-CNS YouTube Channel
- Let's stay connected with BSC Folks-
**Context And Mission**
- In the Life Sciences area, we are looking for a Researcher to work in the computational systems biology approaches to simulate biological networks at different time-scales (Ponce-de-Leon et al., 2023). In particular, we are interested in the development of new approaches to the simulation of different molecular networks and of different type of cells, with emphasis on genome-scale metabolic models, Boolean regulatory networks and agent-based models, as well as the integrations of omic information to validate model predictions. These multi-scale models simulations should be able to be adapted to parallel environments to be deployed to HPC platforms at the BSC and at other HPC centres in Europe.- **Key Duties**
- Co-design multi-scale simulation tools to BSC’s RISC-V and other heterogeneous architectures.
- Design, implement and deploy a set of unit tests to study the scalability and efficiency of the co-designed code and architecture.
- Implement efficient tools to simulate biological processes at different time scales through the integration of different modeling approaches (e.g. kinetic modeling, agent-based modeling, constraint-based modeling).
- Integrate multi-omics data in the model and identify actionable patient-specific targets of therapeutic interest.

**Requirements**:

- Education
- PhD in Computer Science, Bioinformatics or similar topic, with strong background on computational biology.
- Essential Knowledge and Professional Experience
- Proved experience on bioinformatics and computational biology.
- Strong background on computer simulation of biological processes (constraint-based, Boolean, kinetic or agent-based modelling).
- Strong programming skills, in particular on C++ and Python language.
- Administration level in Linux/Unix systems.
- Experience in HPC.
- Additional Knowledge and Professional Experience
- Experience in the preparation and presentation of scientific projects.
- Experience in reporting progress.
- Experience in mentoring/advising PhD studentes.
- Good communication skills (verbal and written) in English
- Competences
- Ability to effectively communicate technical concepts to non-experts.
- Proactive and able to take the initiative when needed.
- Creative thinking.
- Operate independently but love being part of a collaborative team.

**Conditions**
- The position will be located at BSC within the Life Sciences Department
- We offer a full-time contract (37.5h/week), a good working environment, a highly stimulating environment with state-of-the-art infrastructure, flexible working hours, extensive training plan, restaurant tickets, private health insurance, support to the relocation procedures
- Duration: Open-ended contract due to technical and scientific activities linked to the project and budget duration
- Holidays: 23 paid vacation days plus 24th and 31st of December per our collective agreement
- Starting date: inmediate

**Applications procedure and process**- A full CV in English including contact details
- A Cover Letter with a statement of interest in English, including two contacts for further references - Applications without this document will not be considered

At BSC we are seeking continuous improvement in our recruitment processes, for any suggestions or feedback/complaints about our Recruitment Processes, please contact recruitment [at] bsc [dot] es.

For more information follow this link

**Deadline**OTM-R principles for selection processes**
- BSC-CNS is an equal opportunity employer committed to diversity and inclusion. We are pleased to consider all qualified applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, disability or any other basis protected by applicable state o

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