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Postdoctoral Fellow On Biological Data Sciences
hace 3 meses
Created in 2005 by the Generalitat de Catalunya (Government of Catalonia) and the University of Barcelona, IRB Barcelona is a Severo Ochoa Centre of Excellence—a seal that was awarded in 2011.
The institute is devoted to conducting research of excellence in biomedicine and to transferring results to clinical practice, thus improving people's quality of life, while simultaneously promoting the training of outstanding researchers, technology transfer, and public communication of science.
Its 29 laboratories and seven core facilities address basic questions in biology and are orientated to diseases such as cancer, metastasis, Alzheimer's, diabetes, and rare conditions.
IRB Barcelona is an international centre that hosts 500 members and 45 nationalities. It is located in the Barcelona Science Park.IRB Barcelona forms part of the Barcelona Institute of Science and Technology (BIST) and the "Xarxa de Centres de Recerca de Catalunya" (CERCA).
Viral infections, together with human genetics, constitute major risk factors for developing complex diseases.However, the molecular and physiological mechanisms of how these viral infections cause and contribute to non-communicable disease development are unknown thus hampering prevention and therapeutic approaches.
CLARITY will take advantage of cutting-edge experimental technologies and artificial intelligence (AI)-driven analytics to elucidate the molecular and physiological mechanisms of how RSV infection (infectious disease) contributes to asthma (non-communicable disease) development.
In particular, we will use modern AI techniques to integrate the generated RSV data with the bulk of current biomedical knowledge and derive RSV perturbation signatures.
We will then compare these signatures to those of non-communicable human diseases, and implement a strategy to discover causal relationships between them.
Finally, we will identify and validate drug-like molecules with the potential to revert the RSV perturbation induced changes _in vitro_, and provide initial lead compounds for further development.
This position is co-financed by the project "Causative Link between respirAtory syncytial viRus and chronic lung diseases: Identifying Targets for therapY" (CLARITY) form the EU Horizon Europe programme.
DUTIES:
EXPERIENCE, KNOWLEDGE, SKILLS:
Must Have - Required:
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Education:Engineering degree in Computer, Data Sciences or a bachelor in Biosciences. PhD in bioinformatics, data sciences, machine learning or related areas.
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Experience: Previous experience on the use of machine learning and data science techniques. Strong publications record according to his/her career stage.
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Skills:
- Excellent programming and scripting skills, with deep knowledge of Python.
- Excellent knowledge of machine learning packages (Scikit, Keras, Pytorch, etc).
- Competent in the use of HPC systems, virtual machines (OpenNebula) and Grid Containers (Docker, Singularity).
- Excellent interpersonal and communication skills. Highly motivated. Fluency in English.
Desirable:
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Experience: Previous experience working with knowledge graphs (KG) and embedding techniques, as well as with biological data and in an international environment.
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Skills:
Knowledge of AI-based generative models (e.g. VAEs, GANs, Diffusion models, etc)
WORKING CONDITIONS & ENTITLEMENTS:
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Working conditions: Employed in compliance with Spanish legislation and regulations under a full-time contract. Employees receive the benefits of the Spanish Social Security system covering sickness, maternity/paternity leaves and injuries at work.
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Training and Career:Postdoctoral researchers joining IRB Barcelona gain access to the Institute's advanced research training and career development opportunities, all within in a competitive international environment. Courses and workshops on themes of particular interest to postdocs are offered regularly by the Institute.
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Estimated annual gross salary: Salary commensurate with experience and qualifications.
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International environment:Nearly 90 Postdoctoral researchers (more than a half non
- Spanish nationals) are currently working at IRB Barcelona.
HOW TO APPLY & SELECTION PROCESS:
Number of positions available: 1
Selection process:
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Pre-selection: Will be based on CV, motivation letter & experience.
